Generating interpretable maps of single cell chromatin accessibility and RNA-seq datasets with Similarity Weighted Nonnegative Embedding

2019-04-26

Generating interpretable visualizations with SWNE. Comparison of SWNE against other visualization methods, including UMAP and t-SNE. Demonstrations of SWNE on both RNA-seq and chromatin accessibility datasets.

2021-04-27

Topography of spatial gene expression in the human prefrontal cortex

Kristen Maynard, PhD (The Lieber Institute for Brain Development)
Leonardo Collado-Torres, PhD (The Lieber Institute for Brain Development)

2020-10-29

Oncofetal ecosystem: Embryonic tale of Tumorigenesis

Ankur Sharma, PhD (Genome Institute of Singapore)
Jennifer Pham (BioTuring Inc.)

2020-09-30

Using t-SNE for data analysis: A quick introduction

Laurens van der Maaten, PhD (Facebook AI Research, Inventor of t-SNE)

2020-08-28

Mapping Cell Types in Single Cell: A walk through the Past, Present Practices and Future Challenges

Vivek Das, PhD (Novo Nordisk Research Center Seattle, Inc - NNRCSI)

2020-07-29

Characterizing Antitumor Immunity One Cell At A Time

Anthony Cillo, PhD (University Pittsburgh)

2019-09-10

Towards the discovery of lipid-associated macrophage (LAM) cells

Lorenz Adlung, PhD (Weizmann Institute of Science)
Jennifer Pham (BioTuring Inc.)

2019-08-07

Building the single-cell atlas of the bone marrow microenvironment

Anastasia Tikhonova, PhD (NYU Langone Medical Center)
Igor Dolgalev (NYU Langone Medical Center)

2019-04-11

Building a transcriptional atlas of myeloid subsets during neuroinflammation using single-cell RNA sequencing

Roman Sankowski, PhD (Institute of Neuropathology at the University of Freiburg Medical Center)
Jennifer Pham (BioTuring Inc.)

2019-01-23

Understanding chemo-resistance using single-cell RNA sequencing

Ankur Sharma, PhD (Genome Institute of Singapore)
Son Pham, PhD (BioTuring Inc.)