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Publications

Title

Heterogeneity of meningeal B cells reveals a lymphopoietic niche at the CNS borders.

DOI

DOI:10.1126/science.abf9277

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Title

DNA Methylome Alterations Are Associated with Airway Macrophage Differentiation and Phenotype during Lung Fibrosis.

DOI

DOI:10.1164/rccm.202101-0004OC

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Title

Space-occupying brain lesions, trauma-related tau astrogliopathy, and ARTAG: a report of two cases and a literature review.

DOI

DOI:10.1186/s40478-021-01152-3

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Title

In silico immune infiltration profiling combined with functional enrichment analysis reveals a potential role for naïve B cells as a trigger for severe immune responses in the lungs of COVID-19 patients.

DOI

DOI:10.1371/journal.pone.0242900

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Title

Comparison of visualization tools for single-cell RNAseq data.

DOI

DOI:10.1093/nargab/lqaa052

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Title

ASAP 2020 update: an open, scalable and interactive web-based portal for (single-cell) omics analyses.

DOI

DOI:10.1093/nar/gkaa412

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Title

A novel monoclonal antibody reveals the enrichment of NADPH oxidase 5 in human splenic endothelial cells.

DOI

DOI:10.1038/s41598-023-44018-5

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Talk2Data

Title

Type 2 cytokines sensitize human sensory neurons to itch-associated stimuli.

DOI

DOI:10.3389/fnmol.2023.1258823

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Talk2Data

Title

Single cell dynamics of tumor specificity vs bystander activity in CD8+ T cells define the diverse immune landscapes in colorectal cancer.

DOI

DOI:10.1038/s41421-023-00605-4

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Title

PSGL-1 Blockade Induces Classical Activation of Human Tumor-associated Macrophages.

DOI

DOI:10.1158/2767-9764.CRC-22-0513

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Title

A large-scale Boolean model of the rheumatoid arthritis fibroblast-like synoviocytes predicts drug synergies in the arthritic joint.

DOI

DOI:10.1038/s41540-023-00294-5

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Venice

Title

Identification of Paired-related Homeobox Protein 1 as a key mesenchymal transcription factor in pulmonary fibrosis.

DOI

DOI:10.7554/eLife.79840

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Title

iBRIDGE: A Data Integration Method to Identify Inflamed Tumors from Single-cell RNA-Seq Data and Differentiate Cell Type–Specific Markers of Immune-Cell Infiltration.

DOI

DOI:10.1158/2326-6066.CIR-22-0283

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Cell type Prediction

Title

Phagocytosis increases an oxidative metabolic and immune suppressive signature in tumor macrophages.

DOI

DOI:10.1084/jem.20221472

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Title

Antibody-induced erythrophagocyte reprogramming of Kupffer cells prevents anti-CD40 cancer immunotherapy-associated liver toxicity.

DOI

DOI:10.1136/jitc-2022-005718

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