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BBrowserX
Single-cell Analytics Platform
BioTuring Lens
Spatial Omics Analytics Platform
Talk2Data
Single-cell and Spatial Analytics Hub
BioStudio
All-in-one Bioinformatics Platform
SpatialX
Unified Multi-Technology Spatial Analysis Platform
Algorithms
Cell-type prediction
Automatic Cell Labeling Model
Alpha SC
Single-cell Algorithm Suite
Resources
Tutorials
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Publications
BioTuring research and citations
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Blog
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BioTuring’s publications
Research with our products
Title
DOI
IC-VAE: A Novel Deep Learning Framework for Interpreting Multiplexed Tissue Imaging Data.
bioRxiv 2023.11.06.565771; doi: 10.1101/2023.11.06.565771v1
Venice: A New Algorithm for Finding Marker Genes in Single-Cell Transcriptomic Data
bioRxiv 2020.11.16.384479; doi: 10.1101/2020.11.16.384479v1
An Entropy Approach for Choosing Gene Expression Cutoff
bioRxiv 2022.05.05.490711; doi: 10.1101/2022.05.05.490711v1
Hera-T: an efficient and accurate approach for quantifying gene abundances from 10X-Chromium data with high rates of non-exonic reads
bioRxiv 530501; doi: 10.1101/530501
A revisit of RSEM generative model and its EM algorithm for quantifying transcript abundances
bioRxiv 503672; doi: 10.1101/503672
SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing
J Comput Biol 2012 May;19(5):455-77; doi: 10.1089/cmb.2012.0021
Differential responses to lithium in hyperexcitable neurons from patients with bipolar disorder
Nature. 2016 Feb 11;530(7589):242; doi: 10.1038/nature1618
Using single nuclei for RNA-seq to capture the transcriptome of postmortem neurons
Nat Protoc. 2016 Mar;11(3):499-524; doi: 10.1038/nprot.2016.015
Ragout—a reference-assisted assembly tool for bacterial genomes
Bioinformatics. 2014 Jun 15;30(12):i302-9; doi: 10.1093/bioinformatics/btu280
Sixteen diverse laboratory mouse reference genomes define strain-specific haplotypes and novel functional loci
Nat Genet. 2018 Nov;50(11):1574-1583; doi: 10.1038/s41588-018-0223-8
Sibelia: a scalable and comprehensive synteny block generation tool for closely related microbial genomes
Lecture Notes in Computer Science(), vol 8126. Springer, Berlin, Heidelberg; doi: 10.1007/978-3-642-40453-5_17
Paired de bruijn graphs: a novel approach for incorporating mate pair information into genome assemblers
J Comput Biol. 2011 Nov; 18(11): 1625–1634; doi: 10.1089/cmb.2011.0151
ExSPAnder: a universal repeat resolver for DNA fragment assembly
Bioinformatics, Volume 30, Issue 12, 15 June 2014, Pages i293–i301; doi: 10.1093/bioinformatics/btu266
DRIMM-Synteny: decomposing genomes into evolutionary conserved segments
Bioinformatics. 2010 Oct 15;26(20):2509-16. doi; doi: 10.1093/bioinformatics/btq465
Mitochondrial aging defects emerge in directly reprogrammed human neurons due to their metabolic profile
Cell Rep. 2018 May 29;23(9):2550-2558; doi: 10.1016/j.celrep.2018.04.105
Title
IC-VAE: A Novel Deep Learning Framework for Interpreting Multiplexed Tissue Imaging Data.
DOI
bioRxiv 2023.11.06.565771; doi: 10.1101/2023.11.06.565771v1
Title
Venice: A New Algorithm for Finding Marker Genes in Single-Cell Transcriptomic Data
DOI
bioRxiv 2020.11.16.384479; doi: 10.1101/2020.11.16.384479v1
Title
An Entropy Approach for Choosing Gene Expression Cutoff
DOI
bioRxiv 2022.05.05.490711; doi: 10.1101/2022.05.05.490711v1
Title
Hera-T: an efficient and accurate approach for quantifying gene abundances from 10X-Chromium data with high rates of non-exonic reads
DOI
bioRxiv 530501; doi: 10.1101/530501
Title
A revisit of RSEM generative model and its EM algorithm for quantifying transcript abundances
DOI
bioRxiv 503672; doi: 10.1101/503672
Title
SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing
DOI
J Comput Biol 2012 May;19(5):455-77; doi: 10.1089/cmb.2012.0021
Title
Differential responses to lithium in hyperexcitable neurons from patients with bipolar disorder
DOI
Nature. 2016 Feb 11;530(7589):242; doi: 10.1038/nature1618
Title
Using single nuclei for RNA-seq to capture the transcriptome of postmortem neurons
DOI
Nat Protoc. 2016 Mar;11(3):499-524; doi: 10.1038/nprot.2016.015
Title
Ragout—a reference-assisted assembly tool for bacterial genomes
DOI
Bioinformatics. 2014 Jun 15;30(12):i302-9; doi: 10.1093/bioinformatics/btu280
Title
Sixteen diverse laboratory mouse reference genomes define strain-specific haplotypes and novel functional loci
DOI
Nat Genet. 2018 Nov;50(11):1574-1583; doi: 10.1038/s41588-018-0223-8
Title
Sibelia: a scalable and comprehensive synteny block generation tool for closely related microbial genomes
DOI
Lecture Notes in Computer Science(), vol 8126. Springer, Berlin, Heidelberg; doi: 10.1007/978-3-642-40453-5_17
Title
Paired de bruijn graphs: a novel approach for incorporating mate pair information into genome assemblers
DOI
J Comput Biol. 2011 Nov; 18(11): 1625–1634; doi: 10.1089/cmb.2011.0151
Title
ExSPAnder: a universal repeat resolver for DNA fragment assembly
DOI
Bioinformatics, Volume 30, Issue 12, 15 June 2014, Pages i293–i301; doi: 10.1093/bioinformatics/btu266
Title
DRIMM-Synteny: decomposing genomes into evolutionary conserved segments
DOI
Bioinformatics. 2010 Oct 15;26(20):2509-16. doi; doi: 10.1093/bioinformatics/btq465
Title
Mitochondrial aging defects emerge in directly reprogrammed human neurons due to their metabolic profile
DOI
Cell Rep. 2018 May 29;23(9):2550-2558; doi: 10.1016/j.celrep.2018.04.105
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