Hera-T

A fast and accurate algorithm for single-cell transcript quantification.

High-speed
quantification

Using a new strategy for aligning reads to both transcriptome and genome references, Hera-T considerably reduces both the running time and memory consumption for quantifying gene abundances from UMI-count data.

Comparable accuracy

Keeping the accuracy at the top priority, Hera-T generates almost indistinguishable results compared with Cell Ranger. Hera-T also tackles difficult splicing alignment scenarios (with short exons) that Cell Ranger fails to address.

Find out more

Keep up with Hera-T now supports:
latest technologies

1
Droplet-based single-cell RNA-seq
2
CITE-seq (cell hashing and protein measurement)
3
CRISPR guide RNA measurement

Let’s get started

Request Hera-T binary package and instructions