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The single-cell transcriptional landscape of mammalian organogenesis

Junyue Cao, Malte Spielmann, Xiaojie Qiu, Xingfan Huang, Daniel Ibrahim, Andrew Hill, Fan Zhang, Stefan Mundlos, Lena Christiansen, Frank Steemers, others

Most studies of mammalian organogenesis rely on model organisms, and, in particular, the mouse. Mice develop quickly, with just 21 days between fertilization and birth. The implantation of the blastocyst on embryonic day (E) 4.0 is followed by gastrulation and the formation of germ layers on E6.5–E7.51,2. At the early-somite stages, the embryo transits from gastrulation to early organogenesis, forming the neural plate and heart tube (E8.0–E8.5). In the ensuing days (E9.5–E13.5), the embryo expands from hundreds-of-thousands to over ten-million cells, and concurrently develops nearly all major organ systems. Unsurprisingly, these four days have been intensively studied. Indeed, most genes that underlie major developmental defects can be studied in this window

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Species: mouse
Number of cells: 1331984
Number of downloads: 78
Study size: 34GB
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Cell development